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bootscan analysis implemented in simplot v3.5.1 software  (Simplot Science)

 
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    Simplot Science bootscan analysis implemented in simplot v3.5.1 software
    Bootscan Analysis Implemented In Simplot V3.5.1 Software, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/bootscan+analysis+(as+implemented+in+simplot)/bootscan+analysis+simplot+version+3+5+1/pmc06291985-79-12-11
    Average 90 stars, based on 1 article reviews
    bootscan analysis implemented in simplot v3.5.1 software - by Bioz Stars, 2026-10
    90/100 stars

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    Article Title: Discovery and Genomic Characterization of a Novel Ovine Partetravirus and a New Genotype of Bovine Partetravirus
    Article Snippet: Recombination detection was performed using bootscan analysis (as implemented in SimPlot) and GARD .

    Article Title: Genetic characterization of HIV-1 BC recombinants and evolutionary history of the CRF31_BC in Southern Brazil.
    Article Snippet: To evaluate the recombination profiles and evolutionary history of HIV-1 BC recombinants in Southern Brazil, 81 isolates collected in the city of Porto Alegre (Rio Grande do Sul State) from 1998 to 2006 previously subtyped as C (env-gp120/C2V3) were screened in the protease-reverse transcriptase (pr/rt), integrase and gp41 genomic regions.. Detailed phylogenetic, bootscan and informative site analyses were performed to trace the subtype classification.. The evolutionary rate and divergence time of the Brazilian CRF31_BC epidemic were estimated using a Bayesian Markov Chain Monte Carlo framework.

    Article Title: Clinical, epidemiological and molecular features of the HIV-1 subtype C and recombinant forms that are circulating in the city of São Paulo, Brazil
    Article Snippet: Recombination analysis was performed by bootscan analysis as implemented in the Simplot version 3.5.1, [ ] using group M reference sequences representative of the HIV-1 subtypes.

    Article Title: Assessing the HIV-1 Epidemic in Brazilian Drug Users: A Molecular Epidemiology Approach
    Article Snippet: Recombination analysis was performed by bootscan analysis as implemented in the Simplot version 3.5.1 [ ], using representative sequences of HIV-1 subtypes B, C, and F1 as reference.

    Article Title: Molecular Epidemiology of HIV-1 in Panama: Origin of Non-B Subtypes in Samples Collected from 2007 to 2013
    Article Snippet: Analysis of recombination was initially performed by bootscan analysis as implemented in the Simplot version 3.5.1 using representative of all HIV-1 group M subtypes as reference.

    Article Title: NGS combined with phylogenetic analysis to detect HIV-1 dual infection in Romanian people who inject drugs.
    Article Snippet: NGS combined with phylogenetic analysis to detect HIV-1 dual infection in Romanian people who inject drugs



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